Guilherme Bauer Negrini

Guilherme Bauer Negrini

Biomedical Data Scientist

I am deeply fascinated by biological and health sciences, especially data analysis, data visualization, bioinformatics, and biomedical software.

My research projects and interests are currently focused on non-coding RNAs in neurodevelopmental disorders and Human-Computer Interaction applied to bioinformatics software development.

Interests
  • Neuroscience
  • Data Science
  • Bioinformatics
  • Human-Computer Interaction
Education
  • PhD in Biochemistry, 2018 - current

    Universidade Federal do Rio Grande do Sul (UFRGS)

  • BSc in Biomedical Informatics, 2018 - 2021

    Universidade Federal do Ciências da Saúde de Porto Alegre (UFCSPA)

  • Continued Education Course in Higher Education Teaching, 2018 - 2019

    Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)

  • MSc in Neuroscience, 2016 - 2018

    Universidade Federal do Rio Grande do Sul (UFRGS)

  • BSc in Biomedical Sciences, 2012 - 2016

    Universidade Federal do Rio Grande do Sul (UFRGS)

Recent Posts

GitHub Projects

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freesurfer_wrapper

freesurfer_wrapper

freesurfer_wrapper aims to facilitate the creation of a multiprocessing pipeline using FreeSurfer. It is a Python wrapper to execute parallel runs of recon-all and some pial edits algorithms.

Interaction Design Patterns for Bioinformatics

Interaction Design Patterns for Bioinformatics

Interaction design patterns to help bioinformatics software developers to improve the productivity and efficiency of their design process.

Tolkien character or prescription drug name?

Tolkien character or prescription drug name?

Classification using character-level Long Short-Term Memory (LSTM) neural networks

HL7® FHIR® server using Cloud Healthcare API

HL7® FHIR® server using Cloud Healthcare API

Creation of an HL7® FHIR® server using cloud computing resources from the Google Cloud Platform (Portuguese-BR)

Automated miRDB custom target search

Automated miRDB custom target search

Command-line tool to automate the search for microRNA targets in the miRDB base and extract the number of binding sites

Hebbie Ann

Hebbie Ann

Chatbot for interaction on topics in Artificial Neural Networks (Portuguese-BR)

PMdataX - PubMed data eXtraction

PMdataX - PubMed data eXtraction

A command-line tool to fetch data from articles available on PubMed

Speech-to-Text pipeline

Speech-to-Text pipeline

A personal use pipeline integrating Google Cloud services to transcribe audio files

Word2Vec on ASD papers

Word2Vec on ASD papers

Word2Vec word embedding analysis on Autism Spectrum Disorder (ASD) articles abstracts available on PubMed

Scientific Publications

Usability evaluation of circRNA identification tools: Development of a heuristic-based framework and analysis
Resveratrol Prevents Cytoarchitectural and Interneuronal Alterations in the Valproic Acid Rat Model of Autism
The role of T-cells in neurobehavioural development: Insights from the immunodeficient nude mice
Resveratrol prevents brain edema, blood–brain barrier permeability, and altered aquaporin profile in autism animal model

Contact me

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