Guilherme Bauer Negrini

Guilherme Bauer Negrini

Biomedical Scientist and Researcher | Software Developer

I am a biomedical scientist, Ph.D. student in biochemistry and an undergraduate student in biomedical informatics. My interests are mostly related to biological and health sciences, including data analysis, data visualization, bioinformatics, and biomedical software

I am also a member of the Group for Translational Studies on Autism Spectrum Disorder. My research projects involve RNA sequencing data analysis and usability evaluation of bioinformatics tools.

You can know a little more about me here.

Interests
  • Neuroscience
  • Data Science
  • Bioinformatics
  • Human-Computer Interaction
Education

  • PhD in Biochemistry, 2018 - 2022

    Universidade Federal do Rio Grande do Sul (UFRGS)

  • BSc in Biomedical Informatics, 2018 - 2022

    Universidade Federal do Ciências da Saúde de Porto Alegre (UFCSPA)

  • Continued Education Course in Higher Education Teaching, 2018 - 2019

    Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)

  • MSc in Neuroscience, 2016 - 2018

    Universidade Federal do Rio Grande do Sul (UFRGS)

  • BSc in Biomedical Sciences, 2012 - 2016

    Universidade Federal do Rio Grande do Sul (UFRGS)

Recent Posts

Biomedical text natural language processing (BioNLP) using scispaCy
Here we are going to see how to use scispaCy named entity recognition (NER) models to identify drug and disease names mentioned in a medical transcription dataset. Moreover, we are going to combine NER and rule-based matching to extract the drug names and dosages reported in each transcription.
Guilherme Bauer Negrini
Last updated on Apr 15, 2021 10 min read
Biomedical text natural language processing (BioNLP) using scispaCy
Tolkien character or prescription drug name?
Bilbo, Silenor, Avandaryl, Nardil, Cymbalta. Only one of these is actually the name of a character created by J.R.R.Tolkien, author of the classic The Lord of the Rings trilogy. Could we solve this problem using artificial neural networks?
Guilherme Bauer Negrini
Last updated on Apr 15, 2021 9 min read
Project
Tolkien character or prescription drug name?

GitHub Projects

Tolkien character or prescription drug name?

Tolkien character or prescription drug name?

Classification using character-level Long Short-Term Memory (LSTM) neural networks

HL7® FHIR® server using Cloud Healthcare API

HL7® FHIR® server using Cloud Healthcare API

Creation of an HL7® FHIR® server using cloud computing resources from the Google Cloud Platform (Portuguese-BR)

Automated miRDB custom target search

Automated miRDB custom target search

Command-line tool to automate the search for microRNA targets in the miRDB base and extract the number of binding sites

Hebbie Ann

Hebbie Ann

Chatbot for interaction on topics in Artificial Neural Networks (Portuguese-BR)

PMdataX - PubMed data eXtraction

PMdataX - PubMed data eXtraction

A command-line tool to fetch data from articles available on PubMed

Speech-to-Text pipeline

Speech-to-Text pipeline

A personal use pipeline integrating Google Cloud services to transcribe audio files

Word2Vec on ASD papers

Word2Vec on ASD papers

Word2Vec word embedding analysis on Autism Spectrum Disorder (ASD) articles abstracts available on PubMed

Scientific Publications

Effects of single-dose antipurinergic therapy on behavioral and molecular alterations in the valproic acid-induced animal model of autism
Mauro Mozael Hirsch, Iohanna Deckmann, Júlio Santos-Terra, Gabriela Zanotto Staevie, Mellanie Fontes-Dutra, Giovanna Carello-Collar, Marília Körbes-Rockenbach, Gustavo Brum Schwingel, Guilherme Bauer Negrini, Bruna Rabelo, Maria C.B. Gonçalves, Juliana Corrêa-Velloso, Yahaira Naaldijk, Ana R. Castillo, Tomasz Schneider, Victorio Bambini-Junior, Henning Ulrich, Carmem Gottfried
PDF Cite DOI
Abnormal empathy-like pro-social behaviour in the valproic acid model of autism spectrum disorder
Mellanie Fontes-Dutra, Gustavo Della-Flora Nunes, Júlio Santos-Terra, Walquíria Souza-Nunes, Guilherme Bauer Negrini, Mauro Mozael Hirsch, Lily Green, Rudimar Riesgo, Carmem Gottfried, Victorio Bambini-Junior
PDF Cite DOI
Reduced CD4 T Lymphocytes in Lymph Nodes of the Mouse Model of Autism Induced by Valproic Acid
Diego Baronio, Guilherme Bauer Negrini, Kamila Castro, Gustavo Della-Flora Nunes, Rudimar Riesgo, Daniella Arêas Mendes-da-Cruz, Wilson Savino, Carmem Gottfried, Victorio Bambini-Junior
PDF Cite DOI
Resveratrol Prevents Cellular and Behavioral Sensory Alterations in the Animal Model of Autism Induced by Valproic Acid
Mellanie Fontes-Dutra, Júlio Santos-Terra, Iohanna Deckmann, Gustavo Brum Schwingel, Gustavo Della-Flora Nunes, Mauro Mozael Hirsch, Guilherme Bauer Negrini, Rudimar Riesgo, Victorio Bambini-Junior, Cecília Hedin-Pereira, Carmem Gottfried
PDF Cite DOI
See all publications

Contact me

You can use this form to contact me about academic or business opportunities